Gene Transcription Regulation Database

The most complete collection of uniformly processed ChIP-seq data to identify transcription factor binding sites for human and mouse. Convenient web interface with advanced search, browsing and genome browser based on the BioUML platform. For support or any questions contact us at

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How it was constructed?

ChIP-seq experiment information and raw data were collected from publically available sources. Sequenced reads were aligned using Bowtie2 and ChIP-seq peaks were called using 4 different methods. Peaks were merged into clusters and metaclusters to produce non-redundant set of transcription factor binding sites.

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version 16.07

  • 5078 ChIP-seq experiments
  • 542 Transcription factors
  • 183 770 420 298 ChIP-seq reads
  • 146 855 318 517 Reads aligned
  • > 100 000 000 ChIP-seq peaks
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User interface

Use cases