GTRD
Gene Transcription Regulation Database


The most complete collection of uniformly processed ChIP-seq data to identify transcription factor binding sites for human and mouse. Convenient web interface with advanced search, browsing and genome browser based on the BioUML platform.

Start » Documentation »

Statistics
version 16.07

  • 5078 ChIP-seq experiments
  • 542 Transcription factors
  • 183 770 420 298 ChIP-seq reads
  • 146 855 318 517 Reads aligned
  • > 100 000 000 ChIP-seq peaks
Learn more »

Workflow
How it was built?

ChIP-seq experiment information and raw data were collected from publically available sources. Sequenced reads were aligned using Bowtie2 and ChIP-seq peaks were called using 4 different methods.

Learn more »

User interface

Use cases